Package: mstherm 0.4.7
mstherm: Analyze MS/MS Protein Melting Data
Software to aid in modeling and analyzing mass-spectrometry-based proteome melting data. Quantitative data is imported and normalized and thermal behavior is modeled at the protein level. Methods exist for normalization, modeling, visualization, and export of results. For a general introduction to MS-based thermal profiling, see Savitski et al. (2014) <doi:10.1126/science.1255784>.
Authors:
mstherm_0.4.7.tar.gz
mstherm_0.4.7.zip(r-4.5)mstherm_0.4.7.zip(r-4.4)mstherm_0.4.7.zip(r-4.3)
mstherm_0.4.7.tgz(r-4.4-any)mstherm_0.4.7.tgz(r-4.3-any)
mstherm_0.4.7.tar.gz(r-4.5-noble)mstherm_0.4.7.tar.gz(r-4.4-noble)
mstherm_0.4.7.tgz(r-4.4-emscripten)mstherm_0.4.7.tgz(r-4.3-emscripten)
mstherm.pdf |mstherm.html✨
mstherm/json (API)
NEWS
| # Install 'mstherm' in R: |
| install.packages('mstherm', repos = c('https://jvolkening.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:2357800009. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 15 2024 |
| R-4.5-win | OK | Sep 15 2024 |
| R-4.5-linux | OK | Sep 15 2024 |
| R-4.4-win | OK | Sep 15 2024 |
| R-4.4-mac | OK | Sep 15 2024 |
| R-4.3-win | OK | Sep 15 2024 |
| R-4.3-mac | OK | Sep 15 2024 |
Exports:model_experimentmodel_proteinMSThermExperimentnormalize_to_profilenormalize_to_stdnormalize_to_tmwrite.sqlite
Dependencies:codetoolsdoParallelforeachiteratorsnls2plotrixprotoRColorBrewer
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| MSResultSet to data frame. | as.data.frame.MSThermResultSet |
| Model MSThermExperiment. | model_experiment |
| Model single protein. | model_protein |
| Model and analyze MS/MS-based protein melting data. | mstherm-package mstherm |
| Create a new MSThermExperiment. | MSThermExperiment |
| Normalize to a profile. | normalize_to_profile |
| Normalize to a spike-in standard. | normalize_to_std |
| Re-normalize based on Tm. | normalize_to_tm |
| Plot MSThermResult object. | plot.MSThermResult |
| Plot MSThermResultSet object. | plot.MSThermResultSet |
| Summarize MSThermResult object. | summary.MSThermResult |
| Summarize MSThermResultSet object. | summary.MSThermResultSet |
| Export MSThermResultSet to an SQLite database. | write.sqlite |
